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» Finding min-repros in database software
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DILS
2008
Springer
13 years 9 months ago
VisGenome and Ensembl: Usability of Integrated Genome Maps
It is not always clear how best to represent integrated data sets, and which application and database features allow a scientist to take best advantage of data coming from various ...
Joanna Jakubowska, Ela Hunt, John McClure, Matthew...
BMCBI
2010
104views more  BMCBI 2010»
13 years 7 months ago
Parameters for accurate genome alignment
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
Martin C. Frith, Michiaki Hamada, Paul Horton
VLDB
2008
ACM
196views Database» more  VLDB 2008»
14 years 7 months ago
Modelling retrieval models in a probabilistic relational algebra with a new operator: the relational Bayes
This paper presents a probabilistic relational modelling (implementation) of the major probabilistic retrieval models. Such a high-level implementation is useful since it supports ...
Thomas Rölleke, Hengzhi Wu, Jun Wang, Hany Azzam
BMCBI
2007
167views more  BMCBI 2007»
13 years 7 months ago
Applying negative rule mining to improve genome annotation
Background: Unsupervised annotation of proteins by software pipelines suffers from very high error rates. Spurious functional assignments are usually caused by unwarranted homolog...
Irena I. Artamonova, Goar Frishman, Dmitrij Frishm...
BMCBI
2006
114views more  BMCBI 2006»
13 years 7 months ago
Taxonomic colouring of phylogenetic trees of protein sequences
Background: Phylogenetic analyses of protein families are used to define the evolutionary relationships between homologous proteins. The interpretation of protein-sequence phyloge...
Gareth Palidwor, Emmanuel G. Reynaud, Miguel A. An...