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» Finding recurrent sources in sequences
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PVLDB
2008
107views more  PVLDB 2008»
13 years 7 months ago
Finding relevant patterns in bursty sequences
Sequence data is ubiquitous and finding frequent sequences in a large database is one of the most common problems when analyzing sequence data. Unfortunately many sources of seque...
Alexander Lachmann, Mirek Riedewald
DCC
2009
IEEE
14 years 8 months ago
An Implementable Scheme for Universal Lossy Compression of Discrete Markov Sources
We present a new lossy compressor for discrete sources. For coding a source sequence xn , the encoder starts by assigning a certain cost to each reconstruction sequence. It then f...
Shirin Jalali, Andrea Montanari, Tsachy Weissman
BMCBI
2007
148views more  BMCBI 2007»
13 years 7 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole
DM
2000
127views more  DM 2000»
13 years 7 months ago
Special formal series solutions of linear operator equations
The transformation which assigns to a linear operator L the recurrence satisfied by coefficient sequences of the polynomial series in its kernel, is shown to be an isomorphism of ...
Sergei A. Abramov, Marko Petkovsek, Anna A. Ryaben...
BMCBI
2004
125views more  BMCBI 2004»
13 years 7 months ago
A functional hierarchical organization of the protein sequence space
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...
Noam Kaplan, Moriah Friedlich, Menachem Fromer, Mi...