Sequence data is ubiquitous and finding frequent sequences in a large database is one of the most common problems when analyzing sequence data. Unfortunately many sources of seque...
We present a new lossy compressor for discrete sources. For coding a source sequence xn , the encoder starts by assigning a certain cost to each reconstruction sequence. It then f...
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
The transformation which assigns to a linear operator L the recurrence satisfied by coefficient sequences of the polynomial series in its kernel, is shown to be an isomorphism of ...
Sergei A. Abramov, Marko Petkovsek, Anna A. Ryaben...
Background: It is a major challenge of computational biology to provide a comprehensive functional classification of all known proteins. Most existing methods seek recurrent patte...