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BMCBI
2006
169views more  BMCBI 2006»
13 years 10 months ago
Finding biological process modifications in cancer tissues by mining gene expression correlations
Background: Through the use of DNA microarrays it is now possible to obtain quantitative measurements of the expression of thousands of genes from a biological sample. This techno...
Giacomo Gamberoni, Sergio Storari, Stefano Volinia
BMCBI
2007
148views more  BMCBI 2007»
13 years 10 months ago
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
Giulio Pavesi, Federico Zambelli, Graziano Pesole
CC
2007
Springer
121views System Software» more  CC 2007»
13 years 10 months ago
If NP Languages are Hard on the Worst-Case, Then it is Easy to Find Their Hard Instances
We prove that if NP ⊆ BPP, i.e., if SAT is worst-case hard, then for every probabilistic polynomial-time algorithm trying to decide SAT, there exists some polynomially samplable ...
Dan Gutfreund, Ronen Shaltiel, Amnon Ta-Shma
FUIN
2007
130views more  FUIN 2007»
13 years 10 months ago
A Logic-Based Approach to Finding Explanations for Discrepancies in Optimistic Plan Execution
Abstract. Consider an agent executing a plan with nondeterministic actions, in a dynamic environment, which might fail. Suppose that she is given a description of this action domai...
Thomas Eiter, Esra Erdem, Wolfgang Faber, Já...
BMCBI
2005
122views more  BMCBI 2005»
13 years 10 months ago
Finding genomic ontology terms in text using evidence content
Background: The development of text mining systems that annotate biological entities with their properties using scientific literature is an important recent research topic. These...
Francisco M. Couto, Mário J. Silva, Pedro C...