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BMCBI
2006
100views more  BMCBI 2006»
13 years 9 months ago
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
Background: The problem of finding a Shortest Common Supersequence (SCS) of a set of sequences is an important problem with applications in many areas. It is a key problem in biol...
Kang Ning, Hon Wai Leong
BMCBI
2006
103views more  BMCBI 2006»
13 years 9 months ago
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice
Background: The identification of chromosomal homology will shed light on such mysteries of genome evolution as DNA duplication, rearrangement and loss. Several approaches have be...
Xiyin Wang, Xiaoli Shi, Zhe Li, Qihui Zhu, Lei Kon...
BMCBI
2007
116views more  BMCBI 2007»
13 years 9 months ago
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases
Background: The pyridine nucleotide disulfide reductase (PNDR) is a large and heterogeneous protein family divided into two classes (I and II), which reflect the divergent evoluti...
César L. Avila, Viviana A. Rapisarda, Ricar...
JAPLL
2008
91views more  JAPLL 2008»
13 years 9 months ago
Undoing the effects of action sequences
In this paper, we study the following basic problem: After having executed a sequence of actions, find a sequence of actions that brings the agent back to the state just before th...
Thomas Eiter, Esra Erdem, Wolfgang Faber
JAL
2006
101views more  JAL 2006»
13 years 9 months ago
Semi-matchings for bipartite graphs and load balancing
We consider the problem of fairly matching the left-hand vertices of a bipartite graph to the right-hand vertices. We refer to this problem as the optimal semimatching problem; it...
Nicholas J. A. Harvey, Richard E. Ladner, Lá...