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CIKM
2005
Springer
14 years 2 months ago
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors
Many bioinformatics applications would benefit from comparing proteins based on their biological role rather than their sequence. In most biological databases, proteins are alrea...
Francisco M. Couto, Mário J. Silva, Pedro C...
ICDE
2004
IEEE
117views Database» more  ICDE 2004»
14 years 10 months ago
Adapting a Generic Match Algorithm to Align Ontologies of Human Anatomy
The difficulty inherent in schema matching has led to the development of several generic match algorithms. This paper describes how we adapted general approaches to the specific t...
Peter Mork, Philip A. Bernstein
BMCBI
2008
163views more  BMCBI 2008»
13 years 8 months ago
Gene Ontology term overlap as a measure of gene functional similarity
Background: The availability of various high-throughput experimental and computational methods allows biologists to rapidly infer functional relationships between genes. It is oft...
Meeta Mistry, Paul Pavlidis
SEMWEB
2007
Springer
14 years 2 months ago
Using the AgreementMaker to Align Ontologies for the OAEI Campaign 2007
In this paper, we present the AgreementMaker, an ontology alignment tool that incorporates the Descendants Similarity Inheritance (DSI) method. This method uses the structure of th...
William Sunna, Isabel F. Cruz
BMCBI
2006
150views more  BMCBI 2006»
13 years 8 months ago
Cluster analysis of protein array results via similarity of Gene Ontology annotation
Background: With the advent of high-throughput proteomic experiments such as arrays of purified proteins comes the need to analyse sets of proteins as an ensemble, as opposed to t...
Cheryl Wolting, C. Jane McGlade, David Tritchler