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» Fixed-Parameter Algorithms in Phylogenetics
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WABI
2009
Springer
162views Bioinformatics» more  WABI 2009»
14 years 4 months ago
Aligning Biomolecular Networks Using Modular Graph Kernels
Comparative analysis of biomolecular networks constructed using measurements from different conditions, tissues, and organisms offer a powerful approach to understanding the stru...
Fadi Towfic, M. Heather West Greenlee, Vasant Hona...
STOC
1996
ACM
92views Algorithms» more  STOC 1996»
14 years 1 months ago
Constructing Evolutionary Trees in the Presence of Polymorphic Characters
Abstract. Most phylogenetics literature and construction methods based upon characters presume monomorphism (one state per character per species), yet polymorphism (multiple states...
Maria Luisa Bonet, Cynthia A. Phillips, Tandy Warn...
WABI
2009
Springer
127views Bioinformatics» more  WABI 2009»
14 years 4 months ago
Constructing Majority-Rule Supertrees
Background: Supertree methods combine the phylogenetic information from multiple partially-overlapping trees into a larger phylogenetic tree called a supertree. Several supertree ...
Jianrong Dong, David Fernández-Baca, Fred R...
BMCBI
2007
165views more  BMCBI 2007»
13 years 10 months ago
Direct maximum parsimony phylogeny reconstruction from genotype data
Background: Maximum parsimony phylogenetic tree reconstruction from genetic variation data is a fundamental problem in computational genetics with many practical applications in p...
Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ra...
BMCBI
2008
110views more  BMCBI 2008»
13 years 10 months ago
Enhancing the prediction of protein pairings between interacting families using orthology information
Background: It has repeatedly been shown that interacting protein families tend to have similar phylogenetic trees. These similarities can be used to predicting the mapping betwee...
José M. G. Izarzugaza, David de Juan, Carle...