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» Fixed-Parameter Algorithms in Phylogenetics
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CSB
2004
IEEE
141views Bioinformatics» more  CSB 2004»
13 years 11 months ago
MinPD: Distance-Based Phylogenetic Analysis and Recombination Detection of Serially-Sampled HIV Quasispecies
A new computational method to study within-host viral evolution is explored to better understand the evolution and pathogenesis of viruses. Traditional phylogenetic tree methods a...
Patricia Buendia, Giri Narasimhan
BMCBI
2008
111views more  BMCBI 2008»
13 years 7 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...
GECCO
2005
Springer
150views Optimization» more  GECCO 2005»
14 years 26 days ago
A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping
Evolutionary relationships among species can be represented by a phylogenetic tree and inferred by optimising some measure of fitness, such as the statistical likelihood of the t...
Leon Poladian
ACL2
2006
ACM
14 years 1 months ago
Phylogenetic trees in ACL2
Biologists studying the evolutionary relationships between organisms use software packages to solve the computational problems they encounter. Several of these problems involve th...
Warren A. Hunt Jr., Serita M. Nelesen
AAECC
2009
Springer
140views Algorithms» more  AAECC 2009»
13 years 8 months ago
Interesting Examples on Maximal Irreducible Goppa Codes
In this paper a full categorization of irreducible classical Goppa codes of degree 4 and length 9 is given. It is an interesting example in the context of find the number of permut...
Marta Giorgetti