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BMCBI
2011
14 years 9 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
ICLP
2011
Springer
14 years 9 months ago
Transaction Logic with Defaults and Argumentation Theories
Transaction Logic is an extension of classical logic that gracefully integrates both declarative and procedural knowledge and has proved itself as a powerful formalism for many ad...
Paul Fodor, Michael Kifer
POPL
2011
ACM
14 years 8 months ago
Making prophecies with decision predicates
We describe a new algorithm for proving temporal properties expressed in LTL of infinite-state programs. Our approach takes advantage of the fact that LTL properties can often be...
Byron Cook, Eric Koskinen
318
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CASES
2011
ACM
14 years 5 months ago
Enabling parametric feasibility analysis in real-time calculus driven performance evaluation
This paper advocates a rigorously formal and compositional style for obtaining key performance and/or interface metrics of systems with real-time constraints. We propose a hierarc...
Alena Simalatsar, Yusi Ramadian, Kai Lampka, Simon...
CIKM
2011
Springer
14 years 5 months ago
Semantic data markets: a flexible environment for knowledge management
We present Nyaya, a system for the management of Semantic-Web data which couples a general-purpose and extensible storage mechanism with efficient ontology reasoning and querying ...
Roberto De Virgilio, Giorgio Orsi, Letizia Tanca, ...