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BMCBI
2010
172views more  BMCBI 2010»
13 years 10 months ago
Comparison of evolutionary algorithms in gene regulatory network model inference
Background: The evolution of high throughput technologies that measure gene expression levels has created a data base for inferring GRNs (a process also known as reverse engineeri...
Alina Sîrbu, Heather J. Ruskin, Martin Crane
JSAC
2006
157views more  JSAC 2006»
13 years 10 months ago
Traffic grooming in path, star, and tree networks: complexity, bounds, and algorithms
We consider the problem of traffic grooming in WDM path, star, and tree networks. Traffic grooming is a variant of the well-known logical topology design, and is concerned with the...
Shu Huang, Rudra Dutta, George N. Rouskas
ATAL
2010
Springer
13 years 11 months ago
Cooperative problem solving against adversary: quantified distributed constraint satisfaction problem
In this paper, we extend the traditional formalization of a Distributed Constraint Satisfaction Problems (DisCSP) to a Quantified DisCSP. A Quantified DisCSP includes several unive...
Satomi Baba, Atsushi Iwasaki, Makoto Yokoo, Marius...
ITSL
2008
13 years 11 months ago
An Empirical Comparison of NML Clustering Algorithms
Clustering can be defined as a data assignment problem where the goal is to partition the data into nonhierarchical groups of items. In our previous work, we suggested an informati...
Petri Kontkanen, Petri Myllymäki
BMCBI
2007
139views more  BMCBI 2007»
13 years 10 months ago
XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
Background: Biological sequence repeats arranged in tandem patterns are widespread in DNA and proteins. While many software tools have been designed to detect DNA tandem repeats (...
Aaron M. Newman, James B. Cooper