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» Fragment assembly with double-barreled data
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CDB
2004
Springer
172views Database» more  CDB 2004»
14 years 1 months ago
Constraint Database Solutions to the Genome Map Assembly Problem
Abstract. Long DNA sequences have to be cut using restriction enzymes into small fragments whose lengths and/or nucleotide sequences can be analyzed by currently available technolo...
Viswanathan Ramanathan, Peter Z. Revesz
BMCBI
2010
154views more  BMCBI 2010»
13 years 7 months ago
An algorithm for automated closure during assembly
Background: Finishing is the process of improving the quality and utility of draft genome sequences generated by shotgun sequencing and computational assembly. Finishing can invol...
Sergey Koren, Jason R. Miller, Brian Walenz, Grang...
BMCBI
2008
220views more  BMCBI 2008»
13 years 7 months ago
Gene prediction in metagenomic fragments: A large scale machine learning approach
Background: Metagenomics is an approach to the characterization of microbial genomes via the direct isolation of genomic sequences from the environment without prior cultivation. ...
Katharina J. Hoff, Maike Tech, Thomas Lingner, Rol...
ANTSW
2004
Springer
14 years 1 months ago
Hypothesis Corroboration in Semantic Spaces with Swarming Agents
To anticipate and prevent acts of terrorism, Indications and Warnings analysts try to connect clues gleaned from massive quantities of complex data. Multi-agent approaches to suppo...
Peter Weinstein, H. Van Dyke Parunak, Paul Chiusan...
IADIS
2008
13 years 9 months ago
Dagma: Mining Directed Acyclic Graphs
We present how to efficiently mine a set of directed acyclic graphs (DAGs) for unconnected, both multi- or single-rooted, and induced fragments. With a new canonical form that is ...
T. Werth, A. Dreweke, Marc Wörlein, Ingrid Fi...