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» Free energy computation by controlled Langevin dynamics
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PROCEDIA
2010
66views more  PROCEDIA 2010»
13 years 9 months ago
Free energy computation by controlled Langevin dynamics
We propose a nonequilibrium sampling method for computing free energy profiles along a given reaction coordinate. The method consists of two parts: a controlled Langevin sampler ...
Juan C. Latorre, Carsten Hartmann, Christof Sch&uu...
CANDC
2007
ACM
13 years 11 months ago
Chromosome segregation in Escherichia coli division: A free energy-driven string model
Although the mechanisms of eukaryotic chromosome segregation and cell division have been elucidated to a certain extent, those for bacteria remain largely unknown. Here we present...
Jianmiao Fan, Kagan Tuncay, Peter J. Ortoleva
JCC
2006
82views more  JCC 2006»
13 years 11 months ago
Monte Carlo simulations of biomolecules: The MC module in CHARMM
: We describe the implementation of a general and flexible Monte Carlo (MC) module for the program CHARMM, which is used widely for modeling biomolecular systems with empirical ene...
Jie Hu, Ao Ma, Aaron R. Dinner
JAIR
2011
114views more  JAIR 2011»
13 years 1 months ago
Properties of Bethe Free Energies and Message Passing in Gaussian Models
We address the problem of computing approximate marginals in Gaussian probabilistic models by using mean field and fractional Bethe approximations. We define the Gaussian fracti...
Botond Cseke, Tom Heskes
ICCV
2009
IEEE
1136views Computer Vision» more  ICCV 2009»
15 years 3 months ago
Robust Graph-Cut Scene Segmentation and Reconstruction for Free-Viewpoint Video of Complex Dynamic Scenes
Current state-of-the-art image-based scene reconstruction techniques are capable of generating high-fidelity 3D models when used under controlled capture conditions. However, th...
Jean-Yves Guillemaut, Joe Kilner and Adrian Hilton