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RECOMB
2007
Springer
14 years 9 months ago
Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions
Abstract. Given the substantial computational requirements of stochastic simulation, approximation is essential for efficient analysis of any realistic biochemical system. This pap...
Hiroyuki Kuwahara, Chris J. Myers
RECOMB
2005
Springer
14 years 9 months ago
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution
Abstract. With ever increasing amount of available data on protein-protein interaction (PPI) networks and research revealing that these networks evolve at a modular level, discover...
Mehmet Koyutürk, Ananth Grama, Wojciech Szpan...
RECOMB
2003
Springer
14 years 9 months ago
Accurate detection of very sparse sequence motifs
Protein sequence alignments are more reliable the shorter the evolutionary distance. Here, we align distantly related proteins using many closely spaced intermediate sequences as ...
Andreas Heger, Michael Lappe, Liisa Holm
STOC
2007
ACM
100views Algorithms» more  STOC 2007»
14 years 9 months ago
Reordering buffers for general metric spaces
In the reordering buffer problem, we are given an input sequence of requests for service each of which corresponds to a point in a metric space. The cost of serving the requests h...
Matthias Englert, Harald Räcke, Matthias West...
STOC
2005
ACM
156views Algorithms» more  STOC 2005»
14 years 9 months ago
Convex programming for scheduling unrelated parallel machines
We consider the classical problem of scheduling parallel unrelated machines. Each job is to be processed by exactly one machine. Processing job j on machine i requires time pij . ...
Yossi Azar, Amir Epstein