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BMCBI
2007
163views more  BMCBI 2007»
13 years 10 months ago
Strainer: software for analysis of population variation in community genomic datasets
Background: Metagenomic analyses of microbial communities that are comprehensive enough to provide multiple samples of most loci in the genomes of the dominant organism types will...
John M. Eppley, Gene W. Tyson, Wayne M. Getz, Jill...
BIBM
2010
IEEE
286views Bioinformatics» more  BIBM 2010»
13 years 8 months ago
Evaluation of short read metagenomic assembly
Advances in sequencing technologies have equipped researchers with the ability to sequence the collective genome of entire microbial communities commonly referred to as metagenomi...
Anveshi Charuvaka, Huzefa Rangwala
ICPR
2004
IEEE
14 years 11 months ago
Relaxation Labeling Processes for Protein Secondary Structure Prediction
The prediction of protein secondary structure is a classical problem in bioinformatics, and in the past few years several machine learning techniques have been proposed to t. From...
Giacomo Colle, Marcello Pelillo
ICML
2007
IEEE
14 years 11 months ago
Local dependent components
We introduce a mixture of probabilistic canonical correlation analyzers model for analyzing local correlations, or more generally mutual statistical dependencies, in cooccurring d...
Arto Klami, Samuel Kaski
ALT
2005
Springer
14 years 7 months ago
PAC-Learnability of Probabilistic Deterministic Finite State Automata in Terms of Variation Distance
We consider the problem of PAC-learning distributions over strings, represented by probabilistic deterministic finite automata (PDFAs). PDFAs are a probabilistic model for the gen...
Nick Palmer, Paul W. Goldberg