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BMCBI
2008
163views more  BMCBI 2008»
13 years 7 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
BMCBI
2007
145views more  BMCBI 2007»
13 years 7 months ago
Genome bioinformatic analysis of nonsynonymous SNPs
Background: Genome-wide association studies of common diseases for common, low penetrance causal variants are underway. A proportion of these will alter protein sequences, the mos...
David F. Burke, Catherine L. Worth, Eva-Maria Prie...
DILS
2007
Springer
14 years 1 months ago
Bioinformatics Service Reconciliation by Heterogeneous Schema Transformation
This paper focuses on the problem of bioinformatics service reconciliation in a generic and scalable manner so as to enhance interoperability in a highly evolving field. Using XML...
Lucas Zamboulis, Nigel J. Martin, Alexandra Poulov...
IPPS
2005
IEEE
14 years 1 months ago
BioFilter: An Architecture for Parallel Deployment and Dynamic Chaining of Standalone Bioinformatics Tools
A large number of bioinformatics analysis tools available today are processor intensive. Keeping in mind that the amount of biological data to be analyzed is growing steadily, and...
Thomas S. Brettin, Avinash Kewalramani
BMCBI
2006
108views more  BMCBI 2006»
13 years 7 months ago
FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries
Background: High-throughput sequencing makes it possible to rapidly obtain thousands of 16S rDNA sequences from environmental samples. Bioinformatic tools for the analyses of larg...
Yanan Yu, Mya Breitbart, Pat McNairnie, Forest Roh...