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LION
2009
Springer
112views Optimization» more  LION 2009»
14 years 2 months ago
A Graph-Based Semi-supervised Algorithm for Protein Function Prediction from Interaction Maps
Abstract. Protein function prediction represents a fundamental challenge in bioinformatics. The increasing availability of proteomics network data has enabled the development of se...
Valerio Freschi
WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
14 years 1 months ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu
SSPR
2004
Springer
14 years 1 months ago
Learning from General Label Constraints
Most machine learning algorithms are designed either for supervised or for unsupervised learning, notably classification and clustering. Practical problems in bioinformatics and i...
Tijl De Bie, Johan A. K. Suykens, Bart De Moor
ALGORITHMICA
2008
52views more  ALGORITHMICA 2008»
13 years 7 months ago
From Constrained to Unconstrained Maximum Agreement Subtree in Linear Time
We propose and study the Maximum Constrained Agreement Subtree (MCAST) problem, which is a variant of the classical Maximum Agreement Subtree (MAST) problem. Our problem allows us...
V. Berry, Z. S. Peng, H. F. Ting
CHI
2010
ACM
14 years 2 months ago
G-nome surfer: a tabletop interface for collaborative exploration of genomic data
Molecular and computational biologists develop new insights by gathering heterogeneous data from genomic databases and leveraging bioinformatics tools. Through a qualitative study...
Orit Shaer, Guy Kol, Megan Strait, Chloe Fan, Cath...