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BMCBI
2007
143views more  BMCBI 2007»
13 years 9 months ago
RNAspa: a shortest path approach for comparative prediction of the secondary structure of ncRNA molecules
Background: In recent years, RNA molecules that are not translated into proteins (ncRNAs) have drawn a great deal of attention, as they were shown to be involved in many cellular ...
Yair Horesh, Tirza Doniger, Shulamit Michaeli, Ron...
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
14 years 28 days ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
14 years 2 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
DOCENG
2003
ACM
14 years 2 months ago
Set-at-a-time access to XML through DOM
To support the rapid growth of the web and e-commerce, W3C developed DOM as an application programming interface that the abstract, logical tree structure of an XML document. In t...
Hai Chen, Frank Wm. Tompa
NAR
2007
260views more  NAR 2007»
13 years 8 months ago
WoLF PSORT: protein localization predictor
WoLF PSORT is an extension of the PSORT II program for protein subcellular location prediction. WoLF PSORT converts protein amino acid sequences into numerical localization featur...
Paul Horton, Keun-Joon Park, Takeshi Obayashi, Nao...