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BMCBI
2006
115views more  BMCBI 2006»
13 years 7 months ago
The accuracy of several multiple sequence alignment programs for proteins
Background: There have been many algorithms and software programs implemented for the inference of multiple sequence alignments of protein and DNA sequences. The "true" ...
Paulo A. S. Nuin, Zhouzhi Wang, Elisabeth R. M. Ti...
BMCBI
2006
115views more  BMCBI 2006»
13 years 7 months ago
Detecting recombination in evolving nucleotide sequences
Background: Genetic recombination can produce heterogeneous phylogenetic histories within a set of homologous genes. These recombination events can be obscured by subsequent resid...
Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan
BMCBI
2007
108views more  BMCBI 2007»
13 years 7 months ago
Computer-aided identification of polymorphism sets diagnostic for groups of bacterial and viral genetic variants
Background: Single nucleotide polymorphisms (SNPs) and genes that exhibit presence/absence variation have provided informative marker sets for bacterial and viral genotyping. Iden...
Erin P. Price, John Inman-Bamber, Venugopal Thiruv...
PLDI
2000
ACM
14 years 3 days ago
Functional reactive programming from first principles
Functional Reactive Programming, or FRP, is a general framework for programming hybrid systems in a high-level, declarative manner. The key ideas in FRP are its notions of behavio...
Zhanyong Wan, Paul Hudak
DALT
2006
Springer
13 years 11 months ago
A Functional Program for Agents, Actions, and Deontic Specifications
We outline elements of the Abstract Contract Calculator, a prototype language implemented in Haskell (a declarative programming language) in which we simulate agents executing abst...
Adam Zachary Wyner