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ICLP
2010
Springer
14 years 29 days ago
HEX Programs with Action Atoms
hex programs were originally introduced as a general framework for extending declarative logic programming, under the stable model semantics, with the possibility of bidirectional...
Selen Basol, Ozan Erdem, Michael Fink, Giovambatti...
BMCBI
2008
141views more  BMCBI 2008»
13 years 9 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
TPHOL
2009
IEEE
14 years 3 months ago
Trace-Based Coinductive Operational Semantics for While
We present four coinductive operational semantics for the While language accounting for both terminating and non-terminating program runs: big-step and small-step relational semant...
Keiko Nakata, Tarmo Uustalu
APBC
2004
163views Bioinformatics» more  APBC 2004»
13 years 10 months ago
A Combined Model and a Varied Gibbs Sampling Algorithm Used for Motif Discovery
The conserved sequences in gene regulatory regions dominate gene regulation. Discovering these sequences and their functions is important in post genome era. A novel model is cons...
Xiaoming Wu, Bo Wang, Changxin Song, Jingzhi Cheng
BMCBI
2006
118views more  BMCBI 2006»
13 years 9 months ago
Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration
Background: There is an ever increasing rate of data made available on genetic variation, transcriptomes and proteomes. Similarly, a growing variety of bioinformatic programs are ...
Erdahl T. Teber, Edward Crawford, Kent B. Bolton, ...