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BMCBI
2007
89views more  BMCBI 2007»
13 years 9 months ago
msmsEval: tandem mass spectral quality assignment for high-throughput proteomics
Background: In proteomics experiments, database-search programs are the method of choice for protein identification from tandem mass spectra. As amino acid sequence databases grow...
Jason W. H. Wong, Matthew J. Sullivan, Hugh M. Car...
BMCBI
2008
135views more  BMCBI 2008»
13 years 9 months ago
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
Background: In the adaptive immune system, variable regions of immunoglobulin (IG) are encoded by random recombination of variable (V), diversity (D), and joining (J) gene segment...
Xiaojing Wang, Di Wu, SiYuan Zheng, Jing Sun, Lin ...
DEBU
2008
100views more  DEBU 2008»
13 years 9 months ago
WAVE: Automatic Verification of Data-Driven Web Services
Data-driven Web services, viewed broadly as interactive systems available on the Web for users and programs, provide the backbone for increasingly complex Web applications. While ...
Alin Deutsch, Victor Vianu
BMCBI
2007
148views more  BMCBI 2007»
13 years 9 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
ENTCS
2007
116views more  ENTCS 2007»
13 years 9 months ago
Experiments in Cost Analysis of Java Bytecode
Recently, we proposed a general framework for the cost analysis of Java bytecode which can be used for measuring resource usage. This analysis generates, at compile-time, cost rel...
Elvira Albert, Puri Arenas, Samir Genaim, Germ&aac...