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BMCBI
2008
114views more  BMCBI 2008»
13 years 10 months ago
Dinucleotide controlled null models for comparative RNA gene prediction
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
Tanja Gesell, Stefan Washietl
CORR
2010
Springer
122views Education» more  CORR 2010»
13 years 10 months ago
Facility Location with Client Latencies: Linear-Programming based Techniques for Minimum-Latency Problems
We introduce a problem that is a common generalization of the uncapacitated facility location (UFL) and minimum latency (ML) problems, where facilities not only need to be opened ...
Deeparnab Chakrabarty, Chaitanya Swamy
CORR
2010
Springer
153views Education» more  CORR 2010»
13 years 10 months ago
To Feed or Not to Feed Back
We study the communication over Finite State Channels (FSCs), where the encoder and the decoder can control the availability or the quality of the noise-free feedback. Specificall...
Himanshu Asnani, Haim H. Permuter, Tsachy Weissman
BMCBI
2006
112views more  BMCBI 2006»
13 years 10 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
BMCBI
2006
104views more  BMCBI 2006»
13 years 10 months ago
MANET: tracing evolution of protein architecture in metabolic networks
Background: Cellular metabolism can be characterized by networks of enzymatic reactions and transport processes capable of supporting cellular life. Our aim is to find evolutionar...
Hee Shin Kim, Jay E. Mittenthal, Gustavo Caetano-A...