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BMCBI
2006
114views more  BMCBI 2006»
13 years 10 months ago
Taxonomic colouring of phylogenetic trees of protein sequences
Background: Phylogenetic analyses of protein families are used to define the evolutionary relationships between homologous proteins. The interpretation of protein-sequence phyloge...
Gareth Palidwor, Emmanuel G. Reynaud, Miguel A. An...
RECOMB
2007
Springer
14 years 10 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
ENTCS
2006
162views more  ENTCS 2006»
13 years 10 months ago
Continuous Functions on Final Coalgebras
It can be traced back to Brouwer that continuous functions of type StrA B, where StrA is the type of infinite streams over elements of A, can be represented by well founded, Abra...
Neil Ghani, Peter Hancock, Dirk Pattinson
ANLP
2000
89views more  ANLP 2000»
13 years 11 months ago
Assigning Function Tags to Parsed Text
It is generally recognized that the common nonterminal labels for syntactic constituents (NP, VP, etc.) do not exhaust the syntactic and semantic information one would like about ...
Don Blaheta, Eugene Charniak
IANDC
2007
126views more  IANDC 2007»
13 years 9 months ago
Alternating two-way AC-tree automata
We explore the notion of alternating two-way tree automata modulo the theory of finitely many associative-commutative (AC) symbols. This was prompted by questions arising in cryp...
Kumar Neeraj Verma, Jean Goubault-Larrecq