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    BMCBI
    2008
    130views more  BMCBI 2008»
    A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
    13 years 10 months ago
    A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
    Download  www.biomedcentral.com
    Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
    Sheila Podell, Terry Gaasterland, Eric E. Allen
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    BMCBI
    2008
    173views more  BMCBI 2008»
    Improved machine learning method for analysis of gas phase chemistry of peptides
    13 years 10 months ago
    Improved machine learning method for analysis of gas phase chemistry of peptides
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    Background: Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) o...
    Allison Gehrke, Shaojun Sun, Lukasz A. Kurgan, Nat...
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    BMCBI
    2008
    204views more  BMCBI 2008»
    EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
    13 years 10 months ago
    EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
    Download  www.biomedcentral.com
    Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
    Javier Forment, Francisco Gilabert Villamón...
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    BMCBI
    2007
    233views more  BMCBI 2007»
    160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
    13 years 10 months ago
    160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
    Download  www.biomedcentral.com
    Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
    Isaac T. S. Li, Warren Shum, Kevin Truong
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    BMCBI
    2008
    158views more  BMCBI 2008»
    Discovering gene annotations in biomedical text databases
    13 years 10 months ago
    Discovering gene annotations in biomedical text databases
    Download  filer.case.edu
    Currently, most of the discovered biological and biomedical knowledge is available as textual data in scientific papers. And, locating and curating information about a genomic enti...
    Ali Cakmak, Gultekin Özsoyoglu
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