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TREC
2004
13 years 9 months ago
BioText Team Experiments for the TREC 2004 Genomics Track
The BioText group participated in the two main tasks of the TREC 2004 Genomics track. Our approach to the ad hoc task was similar to the one used in the 2003 Genomics track, but d...
Preslav Nakov, Ariel S. Schwartz, Emilia Stoica, M...
BMCBI
2006
146views more  BMCBI 2006»
13 years 7 months ago
GeneTools - application for functional annotation and statistical hypothesis testing
Background: Modern biology has shifted from "one gene" approaches to methods for genomic-scale analysis like microarray technology, which allow simultaneous measurement ...
Vidar Beisvag, Frode K. R. Jünge, Hallgeir Be...
BMCBI
2007
186views more  BMCBI 2007»
13 years 7 months ago
GeneBins: a database for classifying gene expression data, with application to plant genome arrays
Background: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. Results: We deve...
Nicolas Goffard, Georg Weiller
BMCBI
2006
112views more  BMCBI 2006»
13 years 7 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
BMCBI
2006
207views more  BMCBI 2006»
13 years 7 months ago
A new measure for functional similarity of gene products based on Gene Ontology
Background: Gene Ontology (GO) is a standard vocabulary of functional terms and allows for coherent annotation of gene products. These annotations provide a basis for new methods ...
Andreas Schlicker, Francisco S. Domingues, Jö...