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» Gene Expression Clustering with Functional Mixture Models
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BMCBI
2006
144views more  BMCBI 2006»
13 years 9 months ago
More robust detection of motifs in coexpressed genes by using phylogenetic information
Background: Several motif detection algorithms have been developed to discover overrepresented motifs in sets of coexpressed genes. However, in a noisy gene list, the number of ge...
Pieter Monsieurs, Gert Thijs, Abeer A. Fadda, Sigr...
BMCBI
2004
106views more  BMCBI 2004»
13 years 9 months ago
Spotting effect in microarray experiments
Background: Microarray data must be normalized because they suffer from multiple biases. We have identified a source of spatial experimental variability that significantly affects...
Tristan Mary-Huard, Jean-Jacques Daudin, Sté...
BMCBI
2007
105views more  BMCBI 2007»
13 years 9 months ago
Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor sti
Background: High-throughput experiments, such as with DNA microarrays, typically result in hundreds of genes potentially relevant to the process under study, rendering the interpr...
Rob Jelier, Guido Jenster, Lambert C. J. Dorssers,...
NAR
2008
142views more  NAR 2008»
13 years 9 months ago
CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining
CMGSDB (Database for Computational Modeling of Gene Silencing) is an integration of heterogeneous data sources about Caenorhabditis elegans with capabilities for compositional dat...
Amrita Pati, Ying Jin, Karsten Klage, Richard F. H...
DAGSTUHL
2007
13 years 10 months ago
Correlation-based Data Representation
The Dagstuhl Seminar Similarity-based Clustering and its Application to Medicine and Biology (07131) held in March 25–30, 2007, provided an excellent atmosphere for in-depth disc...
Marc Strickert, Udo Seiffert