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» Gene finding in novel genomes
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BMCBI
2007
165views more  BMCBI 2007»
13 years 8 months ago
Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
Carlos Rodríguez Penagos, Heladia Salgado, ...
BMCBI
2007
97views more  BMCBI 2007»
13 years 8 months ago
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets
Background: Array comparative genome hybridization (aCGH) provides information about genomic aberrations. Alterations in the DNA copy number may cause the cell to malfunction, lea...
Carmen Lai, Hugo M. Horlings, Marc J. van de Vijve...
PAKDD
2010
ACM
203views Data Mining» more  PAKDD 2010»
14 years 25 days ago
Finding Itemset-Sharing Patterns in a Large Itemset-Associated Graph
Both itemset mining and graph mining have been studied independently. Here, we introduce a novel data structure, which is an unweighted graph whose vertices contain itemsets. From ...
Mutsumi Fukuzaki, Mio Seki, Hisashi Kashima, Jun S...
BMCBI
2007
106views more  BMCBI 2007»
13 years 8 months ago
Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach
Background: Selenocysteine and pyrrolysine are the 21st and 22nd amino acids, which are genetically encoded by stop codons. Since a number of microbial genomes have been completel...
Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuy...
BMCBI
2004
151views more  BMCBI 2004»
13 years 8 months ago
A computational approach for ordering signal transduction pathway components from genomics and proteomics Data
Background: Signal transduction is one of the most important biological processes by which cells convert an external signal into a response. Novel computational approaches to mapp...
Yin Liu, Hongyu Zhao