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» Gene finding in novel genomes
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BIBE
2007
IEEE
13 years 8 months ago
Hot and Cold: Spatial Fluctuation in HIV-1 Recombination Rates
Coinfection ofa single cell with two or more HIVstrains may produce recombinant viruses upon template switching by the replication machinery. We applied a hierarchical multiple ch...
Misha L. Rajaram, Vladimir N. Minin, Marc A. Sucha...
RECOMB
2005
Springer
14 years 8 months ago
An Interaction-Dependent Model for Transcription Factor Binding
Transcriptional regulation is accomplished by several transcription factor proteins that bind to specific DNA elements in the relative vicinity of the gene, and interact with each ...
Li-San Wang, Shane T. Jensen, Sridhar Hannenhalli
AI
2006
Springer
13 years 11 months ago
A New Profile Alignment Method for Clustering Gene Expression Data
We focus on clustering gene expression temporal profiles, and propose a novel, simple algorithm that is powerful enough to find an efficient distribution of genes over clusters. We...
Ataul Bari, Luis Rueda
BMCBI
2006
122views more  BMCBI 2006»
13 years 8 months ago
CoSMoS: Conserved Sequence Motif Search in the proteome
Background: With the ever-increasing number of gene sequences in the public databases, generating and analyzing multiple sequence alignments becomes increasingly time consuming. N...
Xiao I. Liu, Neeraj Korde, Ursula Jakob, Lars I. L...
ICMLA
2010
13 years 6 months ago
Using Randomised Vectors in Transcription Factor Binding Site Predictions
Finding the location of binding sites in DNA is a difficult problem. Although the location of some binding sites have been experimentally identified, other parts of the genome may ...
Faisal Rezwan, Yi Sun, Neil Davey, Rod Adams, Alis...