CoSMoS: Conserved Sequence Motif Search in the proteome

Background: With the ever-increasing number of gene sequences in the public databases, generating and analyzing multiple sequence alignments becomes increasingly time consuming. Nevertheless it is a task performed on a regular basis by researchers in many labs. Results: We have now created a database called CoSMoS to find the occurrences and at the same time evaluate the significance of sequence motifs and amino acids encoded in the whole genome of the model organism Escherichia coli K12. We provide a precomputed set of multiple sequence alignments for each individual E. coli protein with all of its homologues in the RefSeq database. The alignments themselves, information about the occurrence of sequence motifs together with

• Type: Journal
• Year: 2006
• Where: BMCBI
• Authors: Xiao I. Liu, Neeraj Korde, Ursula Jakob, Lars I. Leichert
• Keywords: BMCBI 2006, Database, Multiple Sequence Alignments, Sequence Motifs