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» Gene finding in novel genomes
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BMCBI
2008
123views more  BMCBI 2008»
13 years 8 months ago
Ori-Finder: A web-based system for finding oriCs in unannotated bacterial genomes
Background: Chromosomal replication is the central event in the bacterial cell cycle. Identification of replication origins (oriCs) is necessary for almost all newly sequenced bac...
Feng Gao, Chun-Ting Zhang
BIBE
2009
IEEE
102views Bioinformatics» more  BIBE 2009»
13 years 12 months ago
Online Discovery and Refinement of Novel Genes Using GeneScope
We present a novel gene finding and validation tool, called GeneScope, which is capable of finding and validating genes declaratively by autonomously integrating heterogeneous onl...
Hasan M. Jamil, J. Jesmin
BMCBI
2006
101views more  BMCBI 2006»
13 years 8 months ago
How repetitive are genomes?
Background: Genome sequences vary strongly in their repetitiveness and the causes for this are still debated. Here we propose a novel measure of genome repetitiveness, the index o...
Bernhard Haubold, Thomas Wiehe
CSB
2005
IEEE
118views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Gene Teams with Relaxed Proximity Constraint
Functionally related genes co-evolve, probably due to the strong selection pressure in evolution. Thus we expect that they are present in multiple genomes. Physical proximity amon...
Sun Kim, Jeong-Hyeon Choi, Jiong Yang
IMSCCS
2006
IEEE
14 years 2 months ago
GenomeBlast: A Web Tool for Small Genome Comparison
Comparative genomics has become an essential approach for identifying homologous gene candidates and their functions, and for studying genome evolution. We developed GenomeBlast, ...
Guoqing Lu, Liying Jiang, Resa M. Kotalik, Thaine ...