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» Gene functional classification from heterogeneous data
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BMCBI
2007
168views more  BMCBI 2007»
13 years 10 months ago
GOSim - an R-package for computation of information theoretic GO similarities between terms and gene products
Background: With the increased availability of high throughput data, such as DNA microarray data, researchers are capable of producing large amounts of biological data. During the...
Holger Fröhlich, Nora Speer, Annemarie Poustk...
BMCBI
2006
148views more  BMCBI 2006»
13 years 10 months ago
Exploiting the full power of temporal gene expression profiling through a new statistical test: Application to the analysis of m
Background: The identification of biologically interesting genes in a temporal expression profiling dataset is challenging and complicated by high levels of experimental noise. Mo...
Veronica Vinciotti, Xiaohui Liu, Rolf Turk, Emile ...
ER
2004
Springer
103views Database» more  ER 2004»
14 years 3 months ago
Querying Heterogeneous Spatial Databases: Combining an Ontology with Similarity Functions
This paper uses a knowledge-based approach to querying heterogeneous spatial databases based on an ontology and conceptual and attribute similarities. The ontology, which may be in...
Mariella Gutiérrez, M. Andrea Rodríg...
BIOCOMP
2008
13 years 11 months ago
Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling
Background: Inferring a gene regulatory network (GRN) from high throughput biological data is often an under-determined problem and is a challenging task due to the following reas...
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...
BMCBI
2011
13 years 1 months ago
Evaluating methods for ranking differentially expressed genes applied to MicroArray Quality Control data
Background: Statistical methods for ranking differentially expressed genes (DEGs) from gene expression data should be evaluated with regard to high sensitivity, specificity, and r...
Koji Kadota, Kentaro Shimizu