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    BMCBI
    2008
    228views more  BMCBI 2008»
    Adaptive diffusion kernel learning from biological networks for protein function prediction
    13 years 8 months ago
    Adaptive diffusion kernel learning from biological networks for protein function prediction
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    Background: Machine-learning tools have gained considerable attention during the last few years for analyzing biological networks for protein function prediction. Kernel methods a...
    Liang Sun, Shuiwang Ji, Jieping Ye
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    BMCBI
    2008
    178views more  BMCBI 2008»
    Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate vi
    13 years 8 months ago
    Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate vi
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    Background: The DNA microarray technology allows the measurement of expression levels of thousands of genes under tens/hundreds of different conditions. In microarray data, genes ...
    Kin-On Cheng, Ngai-Fong Law, Wan-Chi Siu, Alan Wee...
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    SDM
    2007
    SIAM
    98views Data Mining» more  SDM 2007»
    Lattice based Clustering of Temporal Gene-Expression Matrices
    13 years 10 months ago
    Lattice based Clustering of Temporal Gene-Expression Matrices
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    Individuals show different cell classes when they are in the different stages of a disease, have different disease subtypes, or have different response to a treatment or envir...
    Yang Huang, Martin Farach-Colton
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    BMCBI
    2006
    137views more  BMCBI 2006»
    INTEGRATOR: interactive graphical search of large protein interactomes over the Web
    13 years 8 months ago
    INTEGRATOR: interactive graphical search of large protein interactomes over the Web
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    Background: The rapid growth of protein interactome data has elevated the necessity and importance of network analysis tools. However, unlike pure text data, network search spaces...
    Aaron N. Chang, Jason McDermott, Zachary Frazier, ...
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    BMCBI
    2007
    115views more  BMCBI 2007»
    Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
    13 years 8 months ago
    Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
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    Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
    Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
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