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» Gene set analysis for longitudinal gene expression data
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BMCBI
2010
126views more  BMCBI 2010»
13 years 9 months ago
Antisense DNA parameters derived from next-nearest-neighbor analysis of experimental data
Background: The enumeration of tetrameric and other sequence motifs that are positively or negatively correlated with in vivo antisense DNA effects has been a useful addition to t...
Donald M. Gray, Carla W. Gray, Byong-Hoon Yoo, Tzu...
IV
2008
IEEE
109views Visualization» more  IV 2008»
14 years 3 months ago
Visualization of Gene Combinations
Advances in the field of microarray technology have attracted a lot of attention in the last years. More and more biological experiments are conducted based on microarrays. The c...
Christian Tominski, Heidrun Schumann
BMCBI
2008
142views more  BMCBI 2008»
13 years 9 months ago
Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Background: DNA microarray technology allows for the measurement of genome-wide expression patterns. Within the resultant mass of data lies the problem of analyzing and presenting...
Meng Piao Tan, Erin N. Smith, James R. Broach, Chr...
RECOMB
2005
Springer
14 years 9 months ago
The Incompatible Desiderata of Gene Cluster Properties
Abstract. There is widespread interest in comparative genomics in determining if historically and/or functionally related genes are spatially clustered in the genome, and whether t...
Rose Hoberman, Dannie Durand
BMCBI
2011
13 years 3 months ago
SNP-based pathway enrichment analysis for genome-wide association studies
Background: Recently we have witnessed a surge of interest in using genome-wide association studies (GWAS) to discover the genetic basis of complex diseases. Many genetic variatio...
Lingjie Weng, Fabio Macciardi, Aravind Subramanian...