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» Gene set analysis for longitudinal gene expression data
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BCB
2010
138views Bioinformatics» more  BCB 2010»
15 years 24 days ago
Comparative analysis of biclustering algorithms
Biclustering is a very popular method to identify hidden co-regulation patterns among genes. There are numerous biclustering algorithms designed to undertake this challenging task...
Doruk Bozdag, Ashwin S. Kumar, Ümit V. &Ccedi...
BMCBI
2007
127views more  BMCBI 2007»
15 years 5 months ago
Characterization of protein-interaction networks in tumors
Background: Analyzing differential-gene-expression data in the context of protein-interaction networks (PINs) yields information on the functional cellular status. PINs can be for...
Alexander Platzer, Paul Perco, Arno Lukas, Bernd M...
BMCBI
2005
82views more  BMCBI 2005»
15 years 5 months ago
Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases
Background: Quality-control is an important issue in the analysis of gene expression microarrays. One type of problem is regional bias, in which one region of a chip shows artifac...
Mark Reimers, John N. Weinstein
COCOON
2005
Springer
15 years 11 months ago
Algorithmic and Complexity Issues of Three Clustering Methods in Microarray Data Analysis
The complexity, approximation and algorithmic issues of several clustering problems are studied. These non-traditional clustering problems arise from recent studies in microarray ...
Jinsong Tan, Kok Seng Chua, Louxin Zhang
BMCBI
2010
135views more  BMCBI 2010»
15 years 5 months ago
Lists2Networks: Integrated analysis of gene/protein lists
Background: Systems biologists are faced with the difficultly of analyzing results from large-scale studies that profile the activity of many genes, RNAs and proteins, applied in ...
Alexander Lachmann, Avi Ma'ayan