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BMCBI
2008
107views more  BMCBI 2008»
13 years 7 months ago
Extended Newick: it is time for a standard representation of phylogenetic networks
Background: Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks,...
Gabriel Cardona, Francesc Rosselló, Gabriel...
IV
2008
IEEE
296views Visualization» more  IV 2008»
14 years 1 months ago
Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks
This article is addressing a recurrent problem in biology: mining newly built large scale networks. Our approach consists in comparing these new networks to well known ones. The v...
Romain Bourqui, Fabien Jourdan
BMCBI
2005
102views more  BMCBI 2005»
13 years 7 months ago
BioCreAtIvE Task1A: entity identification with a stochastic tagger
Background: Our approach to Task 1A was inspired by Tanabe and Wilbur's ABGene system [1,2]. Like Tanabe and Wilbur, we approached the problem as one of part-of-speech taggin...
Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Og...
BMCBI
2005
142views more  BMCBI 2005»
13 years 7 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds
AAI
2007
132views more  AAI 2007»
13 years 7 months ago
Incremental Extraction of Association Rules in Applicative Domains
In recent years, the KDD process has been advocated to be an iterative and interactive process. It is seldom the case that a user is able to answer immediately with a single query...
Arianna Gallo, Roberto Esposito, Rosa Meo, Marco B...