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» Gene set analysis for longitudinal gene expression data
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IV
2009
IEEE
155views Visualization» more  IV 2009»
14 years 2 months ago
Visualizing Temporal Dynamics at the Genomic and Metabolic Level
We present an application for integrated visualization of gene expression data from time series experiments in gene regulation networks and metabolic networks. Such integration is...
Romain Bourqui, Michel A. Westenberg
BMCBI
2010
135views more  BMCBI 2010»
13 years 7 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...
BMCBI
2004
90views more  BMCBI 2004»
13 years 7 months ago
Statistical monitoring of weak spots for improvement of normalization and ratio estimates in microarrays
Background: Several aspects of microarray data analysis are dependent on identification of genes expressed at or near the limits of detection. For example, regression-based normal...
Igor Dozmorov, Nicholas Knowlton, Yuhong Tang, Mic...
BMCBI
2005
88views more  BMCBI 2005»
13 years 7 months ago
Using large-scale perturbations in gene network reconstruction
Background: Recent analysis of the yeast gene network shows that most genes have few inputs, indicating that enumerative gene reconstruction methods are both useful and computatio...
Thomas MacCarthy, Andrew Pomiankowski, Robert Seym...
ICCTA
2007
IEEE
13 years 11 months ago
New Distance Measure for Microarray Gene Expressions Using Linear Dynamic Range of Photo Multiplier Tube
This paper deals with a new distance measure for genes using their microarray expressions. The distance measure is called, "Maxrange distance", where an experiment speci...
Shubhra Sankar Ray, Sanghamitra Bandyopadhyay, San...