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ALMOB
2006
155views more  ALMOB 2006»
13 years 6 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg
WOB
2008
128views Bioinformatics» more  WOB 2008»
13 years 8 months ago
Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion
Abstract. We study a parametrized definition of gene clusters that permits control over the trade-off between increasing gene content versus conserving gene order within a cluster....
Ximing Xu, David Sankoff
BMCBI
2010
139views more  BMCBI 2010»
13 years 6 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...
EDBTW
2004
Springer
14 years 3 days ago
Clustering Structured Web Sources: A Schema-Based, Model-Differentiation Approach
Abstract. The Web has been rapidly “deepened” with the prevalence of databases online. On this “deep Web,” numerous sources are structured, providing schema-rich data– Th...
Bin He, Tao Tao, Kevin Chen-Chuan Chang
BMCBI
2006
199views more  BMCBI 2006»
13 years 6 months ago
PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
Background: Microarray technology has become a widely accepted and standardized tool in biology. The first microarray data analysis programs were developed to support pair-wise co...
Björn Usadel, Axel Nagel, Dirk Steinhauser, Y...