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ISBRA
2007
Springer
15 years 8 months ago
Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods
The biological interpretation of large-scale gene expression data is one of the challenges in current bioinformatics. The state-of-theart approach is to perform clustering and then...
Italo Zoppis, Daniele Merico, Marco Antoniotti, Bu...
109
Voted
KDD
2003
ACM
122views Data Mining» more  KDD 2003»
16 years 2 months ago
Understanding captions in biomedical publications
From the standpoint of the automated extraction of scientific knowledge, an important but little-studied part of scientific publications are the figures and accompanying captions....
William W. Cohen, Richard C. Wang, Robert F. Murph...
128
Voted
WABI
2010
Springer
141views Bioinformatics» more  WABI 2010»
15 years 25 days ago
An Experimental Study of Quartets MaxCut and Other Supertree Methods
Although many supertree methods have been developed in the last few decades, none has been shown to produce more accurate trees than the popular Matrix Representation with Parsimon...
M. Shel Swenson, Rahul Suri, C. Randal Linder, Tan...
WABI
2001
Springer
15 years 7 months ago
The Performance of Phylogenetic Methods on Trees of Bounded Diameter
We study the convergence rates of neighbor-joining and several new phylogenetic reconstruction methods on families of trees of bounded diameter. Our study presents theoretically ob...
Luay Nakhleh, Usman Roshan, Katherine St. John, Je...
107
Voted
BIBE
2004
IEEE
15 years 6 months ago
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds
Biologists highly rely on good algorithms for finding homologous regions in bimolecular sequences. An advanced homology search program named PatternHunter has recently been develo...
I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsi...