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ICANNGA
2007
Springer
191views Algorithms» more  ICANNGA 2007»
14 years 1 months ago
Novel Multi-layer Non-negative Tensor Factorization with Sparsity Constraints
In this paper we present a new method of 3D non-negative tensor factorization (NTF) that is robust in the presence of noise and has many potential applications, including multi-way...
Andrzej Cichocki, Rafal Zdunek, Seungjin Choi, Rob...
BMCBI
2010
183views more  BMCBI 2010»
13 years 5 months ago
The complexity of gene expression dynamics revealed by permutation entropy
Background: High complexity is considered a hallmark of living systems. Here we investigate the complexity of temporal gene expression patterns using the concept of Permutation En...
Xiaoliang Sun, Yong Zou, Victoria J. Nikiforova, J...
NIPS
2003
13 years 8 months ago
AUC Optimization vs. Error Rate Minimization
The area under an ROC curve (AUC) is a criterion used in many applications to measure the quality of a classification algorithm. However, the objective function optimized in most...
Corinna Cortes, Mehryar Mohri
BMCBI
2007
125views more  BMCBI 2007»
13 years 7 months ago
Statistical tests to compare motif count exceptionalities
Background: Finding over- or under-represented motifs in biological sequences is now a common task in genomics. Thanks to p-value calculation for motif counts, exceptional motifs ...
Stéphane Robin, Sophie Schbath, Vincent Van...
BMCBI
2005
162views more  BMCBI 2005»
13 years 7 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes