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CANDC
2000
ACM
13 years 9 months ago
Sequence Complexity for Biological Sequence Analysis
A new statistical model for DNA considers a sequence to be a mixture of regions with little structure and regions that are approximate repeats of other subsequences, i.e. instance...
Lloyd Allison, Linda Stern, Timothy Edgoose, Trevo...
BMCBI
2007
152views more  BMCBI 2007»
13 years 9 months ago
Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography
Background: Coalescent simulations have proven very useful in many population genetics studies. In order to arrive to meaningful conclusions, it is important that these simulation...
Miguel Arenas, David Posada
BMCBI
2006
130views more  BMCBI 2006»
13 years 9 months ago
CARMA: A platform for analyzing microarray datasets that incorporate replicate measures
Background: The incorporation of statistical models that account for experimental variability provides a necessary framework for the interpretation of microarray data. A robust ex...
Kevin A. Greer, Matthew R. McReynolds, Heddwen L. ...
BMCBI
2008
93views more  BMCBI 2008»
13 years 9 months ago
Hybrid MM/SVM structural sensors for stochastic sequential data
In this paper we present preliminary results stemming from a novel application of Markov Models and Support Vector Machines to splice site classification of Intron-Exon and Exon-I...
Brian Roux, Stephen Winters-Hilt
IJHPCA
2002
101views more  IJHPCA 2002»
13 years 8 months ago
SCALA: A Performance System For Scalable Computing
Lack of effective performance-evaluation environments is a major barrier to the broader use of high performance computing. Conventional performance environments are based on profi...
Xian-He Sun, Thomas Fahringer, Mario Pantano