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RECOMB
2006
Springer
16 years 4 months ago
Efficient Enumeration of Phylogenetically Informative Substrings
We study the problem of enumerating substrings that are common amongst genomes that share evolutionary descent. For example, one might want to enumerate all identical (therefore co...
Stanislav Angelov, Boulos Harb, Sampath Kannan, Sa...
EUROCAST
2007
Springer
122views Hardware» more  EUROCAST 2007»
15 years 8 months ago
Generation of Indexes for Compiling Efficient Parsers from Formal Specifications
abstract Parsing schemata [4] provide a formal, simple and uniform way to describe, analyze and compare different parsing algorithms. The notion of a parsing schema comes from cons...
Carlos Gómez-Rodríguez, Miguel A. Al...
IBERAMIA
2010
Springer
15 years 2 months ago
Text-to-Text Surface Realisation Using Dependency-Tree Replacement
Surface realisation - the task of producing word strings from non-linguistic input data - has been the focus of a great deal of research in the field of data-to-text Natural Langu...
Eder Miranda de Novais, Thiago Dias Tadeu, Ivandr&...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 9 months ago
Discriminative Discovery of Transcription Factor Binding Sites from Location Data
Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
Yuji Kawada, Yasubumi Sakakibara
ISMB
1993
15 years 5 months ago
Knowledge-Based Generation of Machine-Learning Experiments: Learning with DNA Crystallography Data
Thoughit has been possible in the past to learn to predict DNAhydration patterns from crystallographic data, there is ambiguity in the choice of training data (both in terms of th...
Dawn M. Cohen, Casimir A. Kulikowski, Helen Berman