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BMCBI
2004
87views more  BMCBI 2004»
13 years 7 months ago
prot4EST: Translating Expressed Sequence Tags from neglected genomes
Background: The genomes of an increasing number of species are being investigated through generation of expressed sequence tags (ESTs). However, ESTs are prone to sequencing error...
James Wasmuth, Mark L. Blaxter
SSDBM
2011
IEEE
257views Database» more  SSDBM 2011»
12 years 11 months ago
Database-as-a-Service for Long-Tail Science
Database technology remains underused in science, especially in the long tail  the small labs and individual researchers that collectively produce the majority of scientic output...
Bill Howe, Garrett Cole, Emad Souroush, Paraschos ...
FCCM
1999
IEEE
134views VLSI» more  FCCM 1999»
13 years 11 months ago
Runlength Compression Techniques for FPGA Configurations
The time it takes to reconfigure FPGAs can be a significant overhead for reconfigurable computing. In this paper we develop new compression algorithms for FPGA configurations that...
Scott Hauck, William D. Wilson
ICS
2009
Tsinghua U.
14 years 2 months ago
High-performance regular expression scanning on the Cell/B.E. processor
Matching regular expressions (regexps) is a very common workload. For example, tokenization, which consists of recognizing words or keywords in a character stream, appears in ever...
Daniele Paolo Scarpazza, Gregory F. Russell
BMCBI
2010
145views more  BMCBI 2010»
13 years 7 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...