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ASAP
2007
IEEE
122views Hardware» more  ASAP 2007»
14 years 1 months ago
Parallelizing HMMER for Hardware Acceleration on FPGAs
Profile based Hidden Markov Model is a widely used tool in bioinformatics. While being very valuable to biologists, it is extremely compute intensive and suffers from prohibitive...
Steven Derrien, Patrice Quinton
SIGECOM
2006
ACM
119views ECommerce» more  SIGECOM 2006»
14 years 1 months ago
Nash equilibria in graphical games on trees revisited
Graphical games have been proposed as a game-theoretic model of large-scale distributed networks of non-cooperative agents. When the number of players is large, and the underlying...
Edith Elkind, Leslie Ann Goldberg, Paul W. Goldber...
IPPS
2010
IEEE
13 years 5 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
CONEXT
2009
ACM
13 years 8 months ago
Virtually eliminating router bugs
Software bugs in routers lead to network outages, security vulnerabilities, and other unexpected behavior. Rather than simply crashing the router, bugs can violate protocol semant...
Eric Keller, Minlan Yu, Matthew Caesar, Jennifer R...
HCI
2009
13 years 5 months ago
A Similarity Measure for Vision-Based Sign Recognition
When we encounter an English word that we do not understand, we can look it up in a dictionary. However, when an American Sign Language (ASL) user encounters an unknown sign, looki...
Haijing Wang, Alexandra Stefan, Vassilis Athitsos