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» Genome Alignments Using MPI-LAGAN
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BMCBI
2011
13 years 6 days ago
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
Marcus Lechner, Sven Findeiß, Lydia Steiner,...
AO
2011
112views more  AO 2011»
13 years 3 months ago
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data
Biomedical Ontologies are intended to integrate diverse biomedical data to enable intelligent datamining and facilitate translation of basic research into useful clinical knowledg...
Robert Hoehndorf, Colin R. Batchelor, Thomas Bittn...
BMCBI
2007
106views more  BMCBI 2007»
13 years 8 months ago
Simultaneous identification of long similar substrings in large sets of sequences
Background: Sequence comparison faces new challenges today, with many complete genomes and large libraries of transcripts known. Gene annotation pipelines match these sequences in...
Jürgen Kleffe, Friedrich Möller, Burghar...
BMCBI
2005
137views more  BMCBI 2005»
13 years 8 months ago
A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
IPPS
2005
IEEE
14 years 2 months ago
Comparison of Current BLAST Software on Nucleotide Sequences
The computational power needed for searching exponentially growing databases, such as GenBank, has increased dramatically. Three different implementations of the most widely used ...
I. Elizabeth Cha, Eric C. Rouchka