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» Genome Annotation and Comparison System
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BMCBI
2007
152views more  BMCBI 2007»
13 years 11 months ago
A cross-species alignment tool (CAT)
Background: The main two sorts of automatic gene annotation frameworks are ab initio and alignment-based, the latter splitting into two sub-groups. The first group is used for int...
Heng Li, Liang Guan, Tao Liu, Yiran Guo, Wei-Mou Z...
BMCBI
2006
129views more  BMCBI 2006»
13 years 11 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
BMCBI
2010
193views more  BMCBI 2010»
13 years 11 months ago
Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements
Background: Affymetrix GeneChip microarrays are popular platforms for expression profiling in two types of studies: detection of differential expression computed by p-values of t-...
Jakub Mieczkowski, Magdalena E. Tyburczy, Michal D...
LREC
2008
102views Education» more  LREC 2008»
14 years 11 days ago
Annotation Guidelines for Chinese-Korean Word Alignment
For a language pair such as Chinese and Korean that belong to entirely different language families in terms of typology and genealogy, finding the correspondences is quite obscure...
Jinji Li, Dong-Il Kim, Jong-Hyeok Lee
BMCBI
2004
106views more  BMCBI 2004»
13 years 10 months ago
ESTIMA, a tool for EST management in a multi-project environment
Background: Single-pass, partial sequencing of complementary DNA (cDNA) libraries generates thousands of chromatograms that are processed into high quality expressed sequence tags...
Charu G. Kumar, Richard LeDuc, George Gong, Levan ...