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» Genome Rearrangements and Sorting by Reversals
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COMBINATORICS
2007
112views more  COMBINATORICS 2007»
13 years 7 months ago
Reversal Distance for Strings with Duplicates: Linear Time Approximation using Hitting Set
In the last decade there has been an ongoing interest in string comparison problems; to a large extend the interest was stimulated by genome rearrangement problems in computationa...
Petr Kolman, Tomasz Walen
JDA
2007
156views more  JDA 2007»
13 years 7 months ago
A linear time algorithm for the inversion median problem in circular bacterial genomes
In the median problem, we are given a distance or dissimilarity measure d, three genomes G1, G2, and G3, and we want to find a genome G (a median) such that the sum 3 i=1 d(G, Gi...
Enno Ohlebusch, Mohamed Ibrahim Abouelhoda, Kathri...
RECOMB
2009
Springer
14 years 2 months ago
Counting All DCJ Sorting Scenarios
In genome rearrangements, the double cut and join (DCJ) operation, introduced by Yancopoulos et al., allows to represent most rearrangement events that could happen in multichromos...
Marília D. V. Braga, Jens Stoye
RECOMB
2010
Springer
13 years 5 months ago
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving
We study two problems in the double cut and join (DCJ) model: sorting – transforming one multilinear genome into another and halving – transforming a duplicated genome into a p...
Jakub Kovác, Marília D. V. Braga, Je...
BMCBI
2008
125views more  BMCBI 2008»
13 years 7 months ago
A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions
Background: Due to recent progress in genome sequencing, more and more data for phylogenetic reconstruction based on rearrangement distances between genomes become available. Howe...
Martin Bader, Mohamed Ibrahim Abouelhoda, Enno Ohl...