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» Genome Rearrangements and Sorting by Reversals
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BIOINFORMATICS
2011
13 years 2 months ago
Algorithms for sorting unsigned linear genomes by the DCJ operations
Motivation: The double cut and join operation (abbreviated as DCJ) has been extensively used for genomic rearrangement. Although the DCJ distance between signed genomes with both ...
Haitao Jiang, Binhai Zhu, Daming Zhu
SIAMDM
2010
105views more  SIAMDM 2010»
13 years 2 months ago
A Lower Bound on the Transposition Diameter
Sorting permutations by transpositions is an important and difficult problem in genome rearrangements. The transposition diameter TD(n) is the maximum transposition distance among ...
Linyuan Lu, Yiting Yang
JCSS
2002
95views more  JCSS 2002»
13 years 7 months ago
Efficient algorithms for multichromosomal genome rearrangements
Hannenhalli and Pevzner [5] gave a polynomial time algorithm for computing the minimum number of reversals, translocations, fissions, and fusions, that would transform one multichr...
Glenn Tesler
CORR
2004
Springer
168views Education» more  CORR 2004»
13 years 7 months ago
Estimating Genome Reversal Distance by Genetic Algorithm
Sorting by reversals is an important problem in inferring the evolutionary relationship between two genomes. The problem of sorting unsigned permutation has been proven to be NP-ha...
Andy Auyeung, Ajith Abraham