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» Genomic Database Applications in DISCO
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BMCBI
2005
292views more  BMCBI 2005»
13 years 7 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
SIGMOD
2007
ACM
169views Database» more  SIGMOD 2007»
14 years 7 months ago
Genome-scale disk-based suffix tree indexing
With the exponential growth of biological sequence databases, it has become critical to develop effective techniques for storing, querying, and analyzing these massive data. Suffi...
Benjarath Phoophakdee, Mohammed J. Zaki
KDD
2006
ACM
115views Data Mining» more  KDD 2006»
14 years 8 months ago
Aggregating time partitions
Partitions of sequential data exist either per se or as a result of sequence segmentation algorithms. It is often the case that the same timeline is partitioned in many different ...
Evimaria Terzi, Panayiotis Tsaparas, Taneli Mielik...
SAC
2004
ACM
14 years 28 days ago
Classifying biological articles using web resources
Text classification systems on biomedical literature aim to select relevant articles to a specific issue from large corpora. Most systems with an acceptable accuracy are based o...
Francisco M. Couto, Bruno Martins, Mário J....
BMCBI
2007
265views more  BMCBI 2007»
13 years 7 months ago
Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing
Background: Detecting groups of functionally related proteins from their amino acid sequence alone has been a long-standing challenge in computational genome research. Several clu...
Tobias Wittkop, Jan Baumbach, Francisco P. Lobo, S...