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» Genotype Error Detection Using Hidden Markov Models of Haplo...
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WABI
2007
Springer
14 years 1 months ago
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity
Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc
BMCBI
2008
138views more  BMCBI 2008»
13 years 7 months ago
Inference of haplotypic phase and missing genotypes in polyploid organisms and variable copy number genomic regions
Background: The power of haplotype-based methods for association studies, identification of regions under selection, and ancestral inference, is well-established for diploid organ...
Shu-Yi Su, Jonathan White, David J. Balding, Lachl...
WABI
2005
Springer
118views Bioinformatics» more  WABI 2005»
14 years 14 days ago
A Hidden Markov Technique for Haplotype Reconstruction
We give a new algorithm for the genotype phasing problem. Our solution is based on a hidden Markov model for haplotypes. The model has a uniform structure, unlike most solutions pr...
Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko ...
JCB
2006
123views more  JCB 2006»
13 years 7 months ago
Reconstructing Ancestral Haplotypes with a Dictionary Model
We propose a dictionary model for haplotypes. According to the model, a haplotype is constructed by randomly concatenating haplotype segments from a given dictionary of segments. ...
Kristin L. Ayers, Chiara Sabatti, Kenneth Lange
WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
14 years 1 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen