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BMCBI
2010
143views more  BMCBI 2010»
13 years 7 months ago
An efficient biological pathway layout algorithm combining grid-layout and spring embedder for complicated cellular location inf
Background: Graph drawing is one of the important techniques for understanding biological regulations in a cell or among cells at the pathway level. Among many available layout al...
Kaname Kojima, Masao Nagasaki, Satoru Miyano
CIKM
2007
Springer
14 years 1 months ago
A dual-view approach to interactive network visualization
Visualizing network data, from tree structures to arbitrarily connected graphs, is a difficult problem in information visualization. A large part of the problem is that in network...
Galileo Namata, Brian Staats, Lise Getoor, Ben Shn...
LATIN
2010
Springer
14 years 2 months ago
Sharp Separation and Applications to Exact and Parameterized Algorithms
Many divide-and-conquer algorithms employ the fact that the vertex set of a graph of bounded treewidth can be separated in two roughly balanced subsets by removing a small subset o...
Fedor V. Fomin, Daniel Lokshtanov, Fabrizio Grando...
SOSP
2009
ACM
14 years 4 months ago
Quincy: fair scheduling for distributed computing clusters
This paper addresses the problem of scheduling concurrent jobs on clusters where application data is stored on the computing nodes. This setting, in which scheduling computations ...
Michael Isard, Vijayan Prabhakaran, Jon Currey, Ud...
BMCBI
2007
118views more  BMCBI 2007»
13 years 7 months ago
A topological algorithm for identification of structural domains of proteins
Background: Identification of the structural domains of proteins is important for our understanding of the organizational principles and mechanisms of protein folding, and for ins...
Frank Emmert-Streib, Arcady R. Mushegian