NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
This paper explores the architectural implications of integrating computation and molecular probes to form nanoscale sensor processors (nSP). We show how nSPs may enable new compu...
Constantin Pistol, Christopher Dwyer, Alvin R. Leb...
Computer architects utilize simulation tools to evaluate the merits of a new design feature. The time needed to adequately evaluate the tradeoffs associated with adding any new fe...
Kaushal Sanghai, Ting Su, Jennifer G. Dy, David R....
It has been shown that a small number of FPGAs can significantly accelerate certain computing tasks by up to two or three orders of magnitude. However, particularly intensive lar...
Arun Patel, Christopher A. Madill, Manuel Salda&nt...
Lattice gas cellular automata (LGCA) models provide a relatively fast means of simulating fluid flow and can give both quantitative and qualitative insights into flow patterns aro...
Mitchel Johnson, Daniel P. Playne, Kenneth A. Hawi...