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» Hardware Acceleration of HMMER on FPGAs
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HPDC
2006
IEEE
14 years 1 months ago
Exploring I/O Strategies for Parallel Sequence-Search Tools with S3aSim
Parallel sequence-search tools are rising in popularity among computational biologists. With the rapid growth of sequence databases, database segmentation is the trend of the futu...
Avery Ching, Wu-chun Feng, Heshan Lin, Xiaosong Ma...
SASP
2009
IEEE
291views Hardware» more  SASP 2009»
14 years 2 months ago
FCUDA: Enabling efficient compilation of CUDA kernels onto FPGAs
— As growing power dissipation and thermal effects disrupted the rising clock frequency trend and threatened to annul Moore’s law, the computing industry has switched its route...
Alexandros Papakonstantinou, Karthik Gururaj, John...
FPL
2009
Springer
113views Hardware» more  FPL 2009»
14 years 15 days ago
Static versus scheduled interconnect in Coarse-Grained Reconfigurable Arrays
Spatially-tiled architectures, such as Coarse-Grained Reconfigurable Arrays (CGRAs), are powerful architectures for accelerating applications in the digital-signal processing, em...
Brian Van Essen, Aaron Wood, Allan Carroll, Stephe...
ERSA
2006
129views Hardware» more  ERSA 2006»
13 years 9 months ago
Group-Alignment based Accurate Floating-Point Summation on FPGAs
Floating-point summation is one of the most important operations in scientific/numerical computing applications and also a basic subroutine (SUM) in BLAS (Basic Linear Algebra Sub...
Chuan He, Guan Qin, Mi Lu, Wei Zhao
CIDR
2011
234views Algorithms» more  CIDR 2011»
12 years 11 months ago
SWissBox: An Architecture for Data Processing Appliances
Database appliances offer fully integrated hardware, storage, operating system, database, and related software in a single package. Database appliances have a relatively long hist...
Gustavo Alonso, Donald Kossmann, Timothy Roscoe